Size-fractionated microbiome observed during an eight-month long sampling in Jiaozhou Bay and the Yellow Sea

Tao，Jianchang1,2,3; Wang，Wenxiu1,2,3; Weissman，J. L.4; Zhang，Yongyu5; Chen，Songze1,2,3; Zhu，Yuanqing1,3; Zhang，Chuanlun1,2,3; Hou，Shengwei1,2,6

2022-12-01

10.1038/s41597-022-01734-3

Scientific Data   Impact Factor & Quartile

2052-4463

Jiaozhou Bay is a typical semi-enclosed bay with a temperate climate imposed by strong anthropogenic influence. To investigate microbial biodiversity and ecosystem services in this highly dynamic coastal environment, we conducted a monthly microbial survey spanning eight months at two stations in the bay and the open Yellow Sea starting in April 2015. This report provides a comprehensive inventory of amplicon sequences and environmental microbial genomes from this survey. In total, 2,543 amplicon sequence variants were obtained with monthly relative abundance profiles in three size fractions (>2.7 μm, 2.7–0.7 μm, and 0.7–0.22 μm). Shotgun metagenomes yielded 915 high-quality metagenome-assembled genomes with ≥50% completeness and ≤5% contamination. These environmental genomes comprise 27 bacterial and 5 archaeal phyla. We expect this comprehensive dataset will facilitate a better understanding of coastal microbial ecology.

English

First ; Corresponding

National Outstanding Youth Science Fund Project of National Natural Science Foundation of China[42141003];

2-s2.0-85139529223

Scopus

1.Shenzhen Key Laboratory of Marine Archaea Geo-Omics,Department of Ocean Science and Engineering,Southern University of Science and Technology,Shenzhen,518000,China
2.Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou),Guangzhou,511458,China
3.Shanghai Sheshan National Geophysical Observatory,Shanghai Earthquake Agency,Shanghai,200062,China
4.Department of Biological Sciences-Marine and Environmental Biology,University of Southern California,Los Angeles,90089,United States
5.Research Center for Marine Biology and Carbon Sequestration,Shandong Provincial Key Laboratory of Energy Genetics,Qingdao Institute of Bioenergy and Bioprocess Technology,Chinese Academy of Sciences,Qingdao,266000,China
6.State Key Laboratory for Marine Environmental Science,Institute of Marine Microbes and Ecospheres,Xiamen University,Xiamen,361102,China

Tao，Jianchang,Wang，Wenxiu,Weissman，J. L.,et al. Size-fractionated microbiome observed during an eight-month long sampling in Jiaozhou Bay and the Yellow Sea[J]. Scientific Data,2022,9(1).

Tao，Jianchang.,Wang，Wenxiu.,Weissman，J. L..,Zhang，Yongyu.,Chen，Songze.,...&Hou，Shengwei.(2022).Size-fractionated microbiome observed during an eight-month long sampling in Jiaozhou Bay and the Yellow Sea.Scientific Data,9(1).

Tao，Jianchang,et al."Size-fractionated microbiome observed during an eight-month long sampling in Jiaozhou Bay and the Yellow Sea".Scientific Data 9.1(2022).