| Title | Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat |
| Author | |
| Corresponding Author | Lang，Zhaobo; Xue，Yongbiao; Zhang，Yijing |
| Joint first author | Zhang，Yuyun; Li，Zijuan; Liu，Jinyi; Zhang，Yu’e; Ye，Luhuan |
| Publication Years | 2022-11-14
|
| DOI | |
| Source Title | |
| EISSN | 2041-1723
|
| Volume | 13Issue:1 |
| Abstract | The success of common wheat as a global staple crop was largely attributed to its genomic diversity and redundancy due to the merge of different genomes, giving rise to the major question how subgenome-divergent and -convergent transcription is mediated and harmonized in a single cell. Here, we create a catalog of genome-wide transcription factor-binding sites (TFBSs) to assemble a common wheat regulatory network on an unprecedented scale. A significant proportion of subgenome-divergent TFBSs are derived from differential expansions of particular transposable elements (TEs) in diploid progenitors, which contribute to subgenome-divergent transcription. Whereas subgenome-convergent transcription is associated with balanced TF binding at loci derived from TE expansions before diploid divergence. These TFBSs have retained in parallel during evolution of each diploid, despite extensive unbalanced turnover of the flanking TEs. Thus, the differential evolutionary selection of paleo- and neo-TEs contribute to subgenome-convergent and -divergent regulation in common wheat, highlighting the influence of TE repertory plasticity on transcriptional plasticity in polyploid. |
| URL | [Source Record] |
| Indexed By | |
| Language | English
|
| Important Publications | NI Journal Papers
|
| SUSTech Authorship | Corresponding
|
| Citation statistics |
Cited Times [WOS]:2
|
| Document Type | Journal Article |
| Identifier | http://kc.sustech.edu.cn/handle/2SGJ60CL/415747 |
| Department | Institute of Advanced Biotechnology 生命科学学院 |
| Affiliation | 1.National Key Laboratory of Plant Molecular Genetics,CAS Center for Excellence in Molecular Plant Sciences,Shanghai Institute of Plant Physiology and Ecology,Shanghai Institutes for Biological Sciences,Chinese Academy of Sciences,Shanghai,300 Fenglin Road,200032,China 2.University of the Chinese Academy of Sciences,Beijing,100049,China 3.State Key Laboratory of Genetic Engineering,Collaborative Innovation Center of Genetics and Development,Department of Biochemistry,Institute of Plant Biology,School of Life Sciences,Fudan University,Shanghai,200438,China 4.The State Key Laboratory of Plant Cell and Chromosome Engineering,Institute of Genetics and Developmental Biology,the Innovative Academy of Seed Design,Chinese Academy of Sciences,Beijing,100101,China 5.Shanghai Center for Plant Stress Biology,National Key Laboratory of Plant Molecular Genetics,Center of Excellence in Molecular Plant Sciences,Shanghai Institutes for Biological Sciences,Chinese Academy of Sciences,Shanghai,200032,China 6.Henan University,School of Life Science,Kaifeng,Henan,457000,China 7.State Key Laboratory for Crop Genetics and Germplasm Enhancement,Jiangsu Collaborative Innovation Center for Modern Crop Production,Nanjing Agricultural University,No.1 Weigang,Nanjing,Jiangsu,210095,China 8.Institute of Advanced Biotechnology and School of Life Sciences,Southern University of Science and Technology,Shenzhen,518055,China 9.Beijing Institute of Genomics,Chinese Academy of Sciences,and National Centre for Bioinformation,Beijing,100101,China 10.Jiangsu Co-Innovation Center for Modern Production Technology of Grain Crops,Yangzhou University,Yangzhou,225009,China |
| Corresponding Author Affilication | Institute of Advanced Biotechnology; School of Life Sciences |
| Recommended Citation GB/T 7714 |
Zhang，Yuyun,Li，Zijuan,Liu，Jinyi,et al. Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat[J]. Nature Communications,2022,13(1).
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| APA |
Zhang，Yuyun.,Li，Zijuan.,Liu，Jinyi.,Zhang，Yu’e.,Ye，Luhuan.,...&Zhang，Yijing.(2022).Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat.Nature Communications,13(1).
|
| MLA |
Zhang，Yuyun,et al."Transposable elements orchestrate subgenome-convergent and -divergent transcription in common wheat".Nature Communications 13.1(2022).
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